Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs116478427 chr20:29524801 C/T 2.67E-13 118 38.13 50.53 6 KM Plot
THYM rs116539600 chr1:22105918 T/A 1.81E-13 117 42.25 42.88 6 KM Plot
THYM rs11658035 chr17:76505679 A/G 4.75E-6 117 41.77 38.33 25.83 KM Plot
THYM rs11658045 chr17:76505445 G/A 4.75E-6 117 41.77 38.33 25.83 KM Plot
THYM rs116589728 chr4:70255960 C/T 4.8E-13 119 41.22 42.3 6 KM Plot
THYM rs116733150 chr4:70289417 A/C 6.15E-13 118 41.77 42.3 6 KM Plot
THYM rs11686191 chr2:30763821 A/G 3.25E-7 119 38.33 46.6 13.23 KM Plot
THYM rs116896792 chr12:122948907 T/C 7.81E-13 118 40.67 42.55 6 KM Plot
THYM rs11695995 chr2:106725928 C/T 0.000242 116 27.68 36.4 42.73 KM Plot
THYM rs11706035 chr3:53011868 A/T 0.000283 117 42.9 23.75 25.63 KM Plot
THYM rs11708462 chr3:9854865 G/T 1.08E-6 119 25.83 53.63 36.4 KM Plot
THYM rs117100509 chr4:70104132 G/A 4.7E-13 119 41.77 35 6 KM Plot
THYM rs11710394 chr3:53015839 A/G 0.000283 117 42.9 23.75 25.63 KM Plot
THYM rs11710707 chr3:52975916 A/G 0.000172 119 42.82 23.8 25.63 KM Plot
THYM rs11711773 chr3:53040456 C/A 0.000172 119 42.82 23.8 25.63 KM Plot